SRX212185
GSM1055813: ChIP-Seq p300 IMR90+TNF-α; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EP300

Cell type

Cell type Class
Lung
Cell type
Lung fibroblasts
NA
NA

Attributes by original data submitter

Sample

source_name
fetal lung fibroblast
treatment
TNF-α (10ng/mL) 1hr
experiment
ChIP-seq
antibody
p300 (Santa Cruz sc-585)
restriction enzyme
no

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
52935420
Reads aligned (%)
60.6
Duplicates removed (%)
35.3
Number of peaks
18063 (qval < 1E-05)

hg38

Number of total reads
52935420
Reads aligned (%)
61.5
Duplicates removed (%)
34.6
Number of peaks
18151 (qval < 1E-05)

Base call quality data from DBCLS SRA