SRX210720
GSM1054011: Empty ChIP-seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MYC

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

GEO Accession
GSM1054011
cell line
HEK293T
transfection
empty vector
antibody
Anti-c-Myc; Sigma, Cat#: A7470-1ML (Agarose Affinity Gel)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
74831245
Reads aligned (%)
49.7
Duplicates removed (%)
2.8
Number of peaks
5182 (qval < 1E-05)

hg19

Number of total reads
74831245
Reads aligned (%)
49.4
Duplicates removed (%)
4.1
Number of peaks
5501 (qval < 1E-05)

Base call quality data from DBCLS SRA