SRX210701
GSM1053822: eCenH3 MNase input (replicate 2); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
eCenH3 MNase input
cell line
eCenH3 HeLa S3
cell type
Cervical cancer
genotype/variation
CenH3 over-expression
chip antibody
None

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
116514293
Reads aligned (%)
97.7
Duplicates removed (%)
3.3
Number of peaks
2273 (qval < 1E-05)

hg19

Number of total reads
116514293
Reads aligned (%)
96.8
Duplicates removed (%)
4.2
Number of peaks
915 (qval < 1E-05)

Base call quality data from DBCLS SRA