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Install and launch IGV before selecting data to visualize
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ab
wikigenes
PDBj
CellType: Eye-antennal discs
ATCC
MeSH
RIKEN BRC
SRX209932
GSM1053515: Abrupt scrib; Drosophila melanogaster; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
ab
Cell type
Cell type Class
Larvae
Cell type
Eye-antennal discs
NA
NA
Attributes by original data submitter
Sample
source_name
Eye/antennal imaginal discs, scrib mutant [ChIP]
tissue
Eye/antennal imaginal discs
antibody
anti-Abrupt (a polyclonal rabbit antibody from Steven Crews)
strain
FRT82B,scrib1 (Bilder and Perrimon 2000)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
dm3
Number of total reads
11779768
Reads aligned (%)
76.0
Duplicates removed (%)
17.3
Number of peaks
0 (qval < 1E-05)
dm6
Number of total reads
11779768
Reads aligned (%)
73.8
Duplicates removed (%)
19.4
Number of peaks
3207 (qval < 1E-05)
Base call quality data from
DBCLS SRA