SRX209794
GSM1053067: input DNA replicate1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Epidermis
Cell type
Hair follicle stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
HfSCs_input DNA
strain
CD-1
gender
female
age
P52-60
tissue
Mouse back skin
cell type
Hair follicle stem cells (HfSCs)
sorting markers
integrin α6 and CD34
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
49012530
Reads aligned (%)
48.7
Duplicates removed (%)
27.8
Number of peaks
335 (qval < 1E-05)

mm9

Number of total reads
49012530
Reads aligned (%)
48.6
Duplicates removed (%)
27.8
Number of peaks
406 (qval < 1E-05)

Base call quality data from DBCLS SRA