SRX209681
GSM1052766: Input, replicate 2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
Mammary glands
NA
NA

Attributes by original data submitter

Sample

source_name
Mammary glands of 10-week-old wildtype mice treated with E+EP6h, input
strain/background
BALB/c
genotype
wildtype
gender
female
tissue
mammary gland
age
10 weeks
treatment
17β-estradiol for 24 hours and then 17β-estradiol plus progesterone for 6 hrs
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
32693440
Reads aligned (%)
98.3
Duplicates removed (%)
9.2
Number of peaks
546 (qval < 1E-05)

mm9

Number of total reads
32693440
Reads aligned (%)
98.2
Duplicates removed (%)
9.2
Number of peaks
593 (qval < 1E-05)

Base call quality data from DBCLS SRA