SRX209335
GSM1050310: H3 ChIP-Seq Day2 TetoBrn2, rep2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESCs, differentiated
NA
NA

Attributes by original data submitter

Sample

source_name
Day2 differentiating Teto-Brn2 ESCs, H3 ChIP
strain
C57BL/6:129 SvJae F1
cell type
Day2 differentiating Teto-Brn2 ESCs
passage
20-25
chip antibody
H3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
15513494
Reads aligned (%)
98.5
Duplicates removed (%)
9.2
Number of peaks
409 (qval < 1E-05)

mm9

Number of total reads
15513494
Reads aligned (%)
98.3
Duplicates removed (%)
9.4
Number of peaks
431 (qval < 1E-05)

Base call quality data from DBCLS SRA