SRX209330
GSM1050305: Day2 rtta WCE Seq, rep2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESCs, differentiated
NA
NA

Attributes by original data submitter

Sample

source_name
Day2 differentiating rtta ESCs, WCE
strain
C57BL/6:129 SvJae F1
cell type
Day2 differentiating rtta ESCs
passage
20-25
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
19801360
Reads aligned (%)
97.9
Duplicates removed (%)
8.0
Number of peaks
384 (qval < 1E-05)

mm9

Number of total reads
19801360
Reads aligned (%)
97.8
Duplicates removed (%)
8.1
Number of peaks
399 (qval < 1E-05)

Base call quality data from DBCLS SRA