SRX209321
GSM1050296: Day2 TetoBrn2 WCE Seq, rep1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESCs, differentiated
NA
NA

Attributes by original data submitter

Sample

source_name
Day2 differentiating Teto-Brn2 ESCs, WCE
strain
C57BL/6:129 SvJae F1
cell type
Day2 differentiating Teto-Brn2 ESCs
passage
20-25
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
31275754
Reads aligned (%)
97.6
Duplicates removed (%)
11.8
Number of peaks
599 (qval < 1E-05)

mm9

Number of total reads
31275754
Reads aligned (%)
97.4
Duplicates removed (%)
11.8
Number of peaks
643 (qval < 1E-05)

Base call quality data from DBCLS SRA