SRX209318
GSM1050293: ESC WCE Seq, rep2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells, WCE
strain
C57BL/6:129 SvJae F1
cell type
embryonic stem cells (ESCs)
passage
21
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
66325314
Reads aligned (%)
98.0
Duplicates removed (%)
10.3
Number of peaks
636 (qval < 1E-05)

mm9

Number of total reads
66325314
Reads aligned (%)
97.8
Duplicates removed (%)
10.3
Number of peaks
725 (qval < 1E-05)

Base call quality data from DBCLS SRA