Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells, WCE
strain
C57BL/6:129 SvJae F1
cell type
embryonic stem cells (ESCs)
passage
21
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
60637008
Reads aligned (%)
97.5
Duplicates removed (%)
11.3
Number of peaks
591 (qval < 1E-05)

mm9

Number of total reads
60637008
Reads aligned (%)
97.3
Duplicates removed (%)
11.2
Number of peaks
681 (qval < 1E-05)

Base call quality data from DBCLS SRA