SRX208768
GSM1048414: BC075 [ChIP-Seq]; Caenorhabditis elegans; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
npp-3

Cell type

Cell type Class
Embryo
Cell type
Mixed embryo
NA
NA

Attributes by original data submitter

Sample

source_name
Mixed-stage embryos
strain
N2
treatment
no treatment
chip antibody
SY1539_NPP3 [not commercial]

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

ce10

Number of total reads
12785509
Reads aligned (%)
66.4
Duplicates removed (%)
25.2
Number of peaks
333 (qval < 1E-05)

ce11

Number of total reads
12785509
Reads aligned (%)
66.4
Duplicates removed (%)
25.2
Number of peaks
332 (qval < 1E-05)

Base call quality data from DBCLS SRA