Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
npp-13

Cell type

Cell type Class
Embryo
Cell type
Mixed embryo
NA
NA

Attributes by original data submitter

Sample

source_name
Mixed-stage embryos
strain
N2
treatment
no treatment
chip antibody
SDQ3897_NPP13 [Novus Biologicals, catalog# 48580002, lot# G3048-202, Animal SDQ3897]

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

ce10

Number of total reads
8273591
Reads aligned (%)
57.5
Duplicates removed (%)
18.6
Number of peaks
9824 (qval < 1E-05)

ce11

Number of total reads
8273591
Reads aligned (%)
57.5
Duplicates removed (%)
18.6
Number of peaks
9827 (qval < 1E-05)

Base call quality data from DBCLS SRA