SRX208755
GSM1048401: BC085 [ChIP-Seq]; Caenorhabditis elegans; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ama-1

Cell type

Cell type Class
Embryo
Cell type
Mixed embryo
NA
NA

Attributes by original data submitter

Sample

source_name
Mixed-stage embryos
strain
N2
treatment
no treatment
chip antibody
SDQ2357_AMA1 [Novus Biologicals, catalog# 38520002, lot# G3048-029, Animal SDQ2357]

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

ce10

Number of total reads
19595990
Reads aligned (%)
44.0
Duplicates removed (%)
43.4
Number of peaks
4557 (qval < 1E-05)

ce11

Number of total reads
19595990
Reads aligned (%)
44.0
Duplicates removed (%)
43.4
Number of peaks
4689 (qval < 1E-05)

Base call quality data from DBCLS SRA