SRX208487
GSM1048853: Mock (IgG); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
IMR90 Human Fetal Lung Fibroblast cell line
chip antibody
Anti-mouse IgG [Santa Cruz Biotechnology, Mouse monoclonal antibody, Catalog number: Sc-2025, Lot: C1111]
cell line
IMR90
cell type
Human Fetal Lung Fibroblast cell line

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
17730906
Reads aligned (%)
38.2
Duplicates removed (%)
52.8
Number of peaks
3835 (qval < 1E-05)

hg19

Number of total reads
17730906
Reads aligned (%)
37.9
Duplicates removed (%)
54.2
Number of peaks
3963 (qval < 1E-05)

Base call quality data from DBCLS SRA