GSM2299188: TMD8 DMSO IgG Control; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Blood
Cell type
TMD8
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma Diffuse Large B Cell
Attributes by original data submitter
Sample
source_name
TMD8 DMSO IgG Control
cell line
TMD8
cell type
ABC DLBCL cells
disease state
activated B cell-like (ABC) subtype of diffuse large B cell lymphoma (DLBCL)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
IgG Negative Control Extraction Other: For treated samples, 20 million cells were collected by centrifugation, resuspended in room temperature RPMI without FBS (2 Mln cells/ml) and cross-linked with 1% formaldehyde for 5 min at RT. Cross-linking was quenched by addition of 125 mM Glycine for 5 min at RT. Chromatin shearing was performed with a Bioruptor sonicating bath (Diagenode). Chromatin immunoprecipitation was performed with normal rabbit IgG (Santa Cruz #sc-2027) as a negative control. ChIP-enriched DNA samples were used to create adapter-ligated libraries for massively parallel sequencing with the ChIP-Seq DNA Sample Prep Kit (Illumina).