Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pancreas
Cell type
Pancreas
MeSH Description
A nodular organ in the ABDOMEN that contains a mixture of ENDOCRINE GLANDS and EXOCRINE GLANDS. The small endocrine portion consists of the ISLETS OF LANGERHANS secreting a number of hormones into the blood stream. The large exocrine portion (EXOCRINE PANCREAS) is a compound acinar gland that secretes several digestive enzymes into the pancreatic ductal system that empties into the DUODENUM.

Attributes by original data submitter

Sample

source_name
pancreas
strain
C57BL/6
tissue
pancreas
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with Ptf1a antibodies. Standard Illumina ChIP-seq

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
65901261
Reads aligned (%)
98.2
Duplicates removed (%)
24.0
Number of peaks
1296 (qval < 1E-05)

mm9

Number of total reads
65901261
Reads aligned (%)
98.0
Duplicates removed (%)
24.1
Number of peaks
1298 (qval < 1E-05)

Base call quality data from DBCLS SRA