SRX206839
GSM1045473: EED sh3 ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EED

Cell type

Cell type Class
Prostate
Cell type
DU 145
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
DU145 prostate cancer cells
cell line
DU145 prostate cancer cells
genotype/variation
EED knockdown
chip antibody
Anti-EED [Millipore, cat# 05-1320, Lot# NG1841057]

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19581385
Reads aligned (%)
93.5
Duplicates removed (%)
19.3
Number of peaks
1850 (qval < 1E-05)

hg19

Number of total reads
19581385
Reads aligned (%)
92.8
Duplicates removed (%)
19.4
Number of peaks
1854 (qval < 1E-05)

Base call quality data from DBCLS SRA