Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RUNX1

Cell type

Cell type Class
Blood
Cell type
Jurkat
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
Jurkat_RUNX1_ChIP
cell line
Jurkat Trex (Invitrogen)
chip antibody
RUNX1
chip antibody vendor
Santa Cruz

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
132301552
Reads aligned (%)
80.3
Duplicates removed (%)
15.9
Number of peaks
3810 (qval < 1E-05)

hg38

Number of total reads
132301552
Reads aligned (%)
82.0
Duplicates removed (%)
14.7
Number of peaks
4178 (qval < 1E-05)

Base call quality data from DBCLS SRA