Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ZMYND11

Cell type

Cell type Class
Prostate
Cell type
DU 145
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
brain mets prostate adenocarcinoma
tissue
prostate adenocarcinoma metastaticized to brain
cancer type
Pca
cell line
DU145
chip target
ZMYND11/BS69

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP DNA was isolated as described in Hollenhorst et. al., Genes and Development, 2011 Sequencing libraries were created as described in Plotnik et.al. Nucleic Acids Research. 2014.

Sequencing Platform

instrument_model
NextSeq 500

hg19

Number of total reads
31997196
Reads aligned (%)
82.4
Duplicates removed (%)
12.2
Number of peaks
1083 (qval < 1E-05)

hg38

Number of total reads
31997196
Reads aligned (%)
84.3
Duplicates removed (%)
10.9
Number of peaks
1282 (qval < 1E-05)

Base call quality data from DBCLS SRA