SRX206368
GSM1038262: ChIP-Seq WCE 48HR; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
ZHBTc4 ES cells
strain
C57BL/6-129
chip antibody
None
cell type
Embryonic stem cells
concentration
2 ug/mL
drug
dox
duration of treatment
48 hr

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
23986565
Reads aligned (%)
94.3
Duplicates removed (%)
30.2
Number of peaks
552 (qval < 1E-05)

mm9

Number of total reads
23986565
Reads aligned (%)
94.1
Duplicates removed (%)
30.3
Number of peaks
590 (qval < 1E-05)

Base call quality data from DBCLS SRA