SRX2060925
GSM2296278: SJSA, ChIP-Seq, Nutlin treated; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TP53

Cell type

Cell type Class
Bone
Cell type
SJSA-1
Primary Tissue
Bone
Tissue Diagnosis
Osteosarcoma

Attributes by original data submitter

Sample

source_name
SJSA, Nutlin treated
cell line
Osteosarcoma Cell Line SJSA
chip antibody
p53 (DO1) (Calbiochem, catalog# OP43-100mg, lot# 2635181)
treatment
Nutlin

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Custom Illumina TruSeq ChIP Library Preparation Kit

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
60020748
Reads aligned (%)
87.9
Duplicates removed (%)
8.2
Number of peaks
13202 (qval < 1E-05)

hg38

Number of total reads
60020748
Reads aligned (%)
89.7
Duplicates removed (%)
7.1
Number of peaks
13350 (qval < 1E-05)

Base call quality data from DBCLS SRA