Toggle navigation
ChIP-Atlas
Peak Browser
Target Genes
Colocalization
Enrichment Analysis
Publications
Docs
Advanced
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: TP53
wikigenes
PDBj
CellType: SJSA-1
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX2060925
GSM2296278: SJSA, ChIP-Seq, Nutlin treated; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
TP53
Cell type
Cell type Class
Bone
Cell type
SJSA-1
Primary Tissue
Bone
Tissue Diagnosis
Osteosarcoma
Attributes by original data submitter
Sample
source_name
SJSA, Nutlin treated
cell line
Osteosarcoma Cell Line SJSA
chip antibody
p53 (DO1) (Calbiochem, catalog# OP43-100mg, lot# 2635181)
treatment
Nutlin
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Custom Illumina TruSeq ChIP Library Preparation Kit
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
60020748
Reads aligned (%)
87.9
Duplicates removed (%)
8.2
Number of peaks
13202 (qval < 1E-05)
hg38
Number of total reads
60020748
Reads aligned (%)
89.7
Duplicates removed (%)
7.1
Number of peaks
13350 (qval < 1E-05)
Base call quality data from
DBCLS SRA