SRX2060924
GSM2296277: SJSA, ChIP-Seq, DMSO treated; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TP53

Cell type

Cell type Class
Bone
Cell type
SJSA-1
Primary Tissue
Bone
Tissue Diagnosis
Osteosarcoma

Attributes by original data submitter

Sample

source_name
SJSA, DMSO treated
cell line
Osteosarcoma Cell Line SJSA
chip antibody
p53 (DO1) (Calbiochem, catalog# OP43-100mg, lot# 2635181)
treatment
DMSO

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Custom Illumina TruSeq ChIP Library Preparation Kit

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
48946329
Reads aligned (%)
82.7
Duplicates removed (%)
10.5
Number of peaks
3056 (qval < 1E-05)

hg38

Number of total reads
48946329
Reads aligned (%)
84.6
Duplicates removed (%)
9.2
Number of peaks
3118 (qval < 1E-05)

Base call quality data from DBCLS SRA