SRX2060923
GSM2296276: SJSA, ChIP-Seq, Input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Bone
Cell type
SJSA-1
Primary Tissue
Bone
Tissue Diagnosis
Osteosarcoma

Attributes by original data submitter

Sample

source_name
SJSA, Input
cell line
Osteosarcoma Cell Line SJSA
chip antibody
none
treatment
Input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Custom Illumina TruSeq ChIP Library Preparation Kit

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
30181692
Reads aligned (%)
97.5
Duplicates removed (%)
2.3
Number of peaks
727 (qval < 1E-05)

hg19

Number of total reads
30181692
Reads aligned (%)
96.8
Duplicates removed (%)
3.2
Number of peaks
870 (qval < 1E-05)

Base call quality data from DBCLS SRA