SRX2060921
GSM2296274: MCF7, ChIP-Seq, DMSO treated; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TP53

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7, DMSO treated
cell line
Breast Carcinoma Cell Line MCF7
chip antibody
p53 (DO1) (Calbiochem, catalog# OP43-100mg, lot# 2635181)
treatment
DMSO

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Custom Illumina TruSeq ChIP Library Preparation Kit

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
63678086
Reads aligned (%)
98.3
Duplicates removed (%)
3.8
Number of peaks
1562 (qval < 1E-05)

hg19

Number of total reads
63678086
Reads aligned (%)
97.5
Duplicates removed (%)
5.2
Number of peaks
1670 (qval < 1E-05)

Base call quality data from DBCLS SRA