SRX205987
GSM1040574: endogenous Ikaros rep2, lanes 1 and 2 [primary pre-B cells]; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ikzf1

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
primary pre-B cell
strain
a mix of C57BL/6 and 129
tissue
Fetal liver
cell type
primary pre-B cell
chip antibody
Rabbit anti-C-terminal Ikaros [from Stephen Smale Lab]

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
46094756
Reads aligned (%)
83.8
Duplicates removed (%)
32.2
Number of peaks
49246 (qval < 1E-05)

mm9

Number of total reads
46094756
Reads aligned (%)
83.7
Duplicates removed (%)
32.3
Number of peaks
49291 (qval < 1E-05)

Base call quality data from DBCLS SRA