Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rpa1

Cell type

Cell type Class
Blood
Cell type
Thymocytes
MeSH Description
HEMATOPOIETIC PROGENITOR CELLS that have migrated to the THYMUS where they differentiate into T-LYMPHOCYTES. Thymocytes are classified into maturational stages based on the expression of CELL SURFACE ANTIGENS.

Attributes by original data submitter

Sample

source_name
thymocyte
chip antibody manufacturer
Calbiochem
cell type
thymocyte
strain
C57BL/6
genotype
53BP1ko
chip antibody
RPA

Sequenced DNA Library

library_name
GSM1040434: thymocyte_53BP1ko_RPAip_a
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
33102064
Reads aligned (%)
92.7
Duplicates removed (%)
36.1
Number of peaks
711 (qval < 1E-05)

mm9

Number of total reads
33102064
Reads aligned (%)
92.6
Duplicates removed (%)
36.2
Number of peaks
749 (qval < 1E-05)

Base call quality data from DBCLS SRA