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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Rpa1
wikigenes
PDBj
CellType: B cells
ATCC
MeSH
RIKEN BRC
SRX205957
GSM1040429: activatedB IsceI 53BP1ko AIDko RPAip RecJf a
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Rpa1
Cell type
Cell type Class
Blood
Cell type
B cells
NA
NA
Attributes by original data submitter
Sample
source_name
in vitro activated B cells
chip antibody manufacturer
Calbiochem
cell type
in vitro activated B cells
strain
C57BL/6
genotype
IsceI_53BP1ko_AIDko
chip antibody
RPA
chip dna treatment
RecJf
Sequenced DNA Library
library_name
GSM1040429: activatedB_IsceI_53BP1ko_AIDko_RPAip_RecJf_a
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
30760740
Reads aligned (%)
59.1
Duplicates removed (%)
81.1
Number of peaks
11822 (qval < 1E-05)
mm9
Number of total reads
30760740
Reads aligned (%)
59.1
Duplicates removed (%)
81.2
Number of peaks
11798 (qval < 1E-05)
Base call quality data from
DBCLS SRA