Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rpa1

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
in vitro activated B cells
chip antibody manufacturer
Calbiochem
cell type
in vitro activated B cells
strain
C57BL/6
genotype
H2AXko
chip antibody
RPA
cell cycle
S

Sequenced DNA Library

library_name
GSM1040425: activatedB_H2AXko_S_RPAip_a
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
34021301
Reads aligned (%)
80.0
Duplicates removed (%)
39.7
Number of peaks
2949 (qval < 1E-05)

mm9

Number of total reads
34021301
Reads aligned (%)
80.0
Duplicates removed (%)
39.7
Number of peaks
3003 (qval < 1E-05)

Base call quality data from DBCLS SRA