SRX205946
GSM1040418: activatedB ER-IsceI 53BP1ko AIDko RPAip 24h

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rpa1

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
in vitro activated B cells
chip antibody manufacturer
Calbiochem
cell type
in vitro activated B cells
strain
C57BL/6
genotype
ER-IsceI_53BP1ko_AIDko
chip antibody
RPA
cell treatment
TAM 24h

Sequenced DNA Library

library_name
GSM1040418: activatedB_ER-IsceI_53BP1ko_AIDko_RPAip_24h
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
32271191
Reads aligned (%)
91.5
Duplicates removed (%)
24.6
Number of peaks
461 (qval < 1E-05)

mm9

Number of total reads
32271191
Reads aligned (%)
91.4
Duplicates removed (%)
24.7
Number of peaks
521 (qval < 1E-05)

Base call quality data from DBCLS SRA