SRX205936
GSM1040408: activatedB 53BP1ko RPAip b

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rpa1

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
in vitro activated B cells
chip antibody manufacturer
Calbiochem
cell type
in vitro activated B cells
strain
C57BL/6
genotype
53BP1ko
chip antibody
RPA

Sequenced DNA Library

library_name
GSM1040408: activatedB_53BP1ko_RPAip_b
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
29911387
Reads aligned (%)
76.7
Duplicates removed (%)
44.4
Number of peaks
3073 (qval < 1E-05)

mm9

Number of total reads
29911387
Reads aligned (%)
76.6
Duplicates removed (%)
44.5
Number of peaks
3120 (qval < 1E-05)

Base call quality data from DBCLS SRA