SRX205925
GSM1040397: activatedB 53BP1ko ATMi G1 RPA b

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rpa1

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
in vitro activated B cells
cell type
in vitro activated B cells
strain
C57BL/6
genotype
53BP1ko
chip antibody
RPA
cell treatment
ATM inhibitor
cell cycle
G1

Sequenced DNA Library

library_name
GSM1040397: activatedB_53BP1ko_ATMi_G1_RPA_b
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
39941888
Reads aligned (%)
68.3
Duplicates removed (%)
13.9
Number of peaks
1594 (qval < 1E-05)

mm9

Number of total reads
39941888
Reads aligned (%)
68.2
Duplicates removed (%)
13.9
Number of peaks
1609 (qval < 1E-05)

Base call quality data from DBCLS SRA