Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rpa1

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
in vitro activated B cells
chip antibody manufacturer
Calbiochem
cell type
in vitro activated B cells
strain
C57BL/6
genotype
AIDtg_53BP1ko
chip antibody
RPA
chip dna treatment
Mbnuc

Sequenced DNA Library

library_name
GSM1040395: activatedB_AIDtg_53BP1ko_RPAip_Mbnuc
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
100460940
Reads aligned (%)
46.7
Duplicates removed (%)
63.1
Number of peaks
11144 (qval < 1E-05)

mm9

Number of total reads
100460940
Reads aligned (%)
46.6
Duplicates removed (%)
63.1
Number of peaks
11220 (qval < 1E-05)

Base call quality data from DBCLS SRA