SRX205922
GSM1040394: activatedB AIDtg 53BP1ko RPAip ExoI

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rpa1

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
in vitro activated B cells
chip antibody manufacturer
Calbiochem
cell type
in vitro activated B cells
strain
C57BL/6
genotype
AIDtg_53BP1ko
chip antibody
RPA
chip dna treatment
ExoI

Sequenced DNA Library

library_name
GSM1040394: activatedB_AIDtg_53BP1ko_RPAip_ExoI
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
20961488
Reads aligned (%)
71.0
Duplicates removed (%)
93.8
Number of peaks
11567 (qval < 1E-05)

mm9

Number of total reads
20961488
Reads aligned (%)
71.0
Duplicates removed (%)
93.8
Number of peaks
11651 (qval < 1E-05)

Base call quality data from DBCLS SRA