SRX205541
GSM1039566: mouse E13.5 FL rep1 H3K27ac ChIP-Seq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Embryo
Cell type
Forelimb
MeSH Description
A front limb of a quadruped. (The Random House College Dictionary, 1980)

Attributes by original data submitter

Sample

source_name
mouse_E13.5_FL
developmental stage
gestational day E13.5
tissue
forelimb autopod
chip antibody
H3K27ac
chip antibody vendor
Abcam

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
43796837
Reads aligned (%)
99.0
Duplicates removed (%)
10.9
Number of peaks
5903 (qval < 1E-05)

mm9

Number of total reads
43796837
Reads aligned (%)
98.8
Duplicates removed (%)
10.9
Number of peaks
5940 (qval < 1E-05)

Base call quality data from DBCLS SRA