Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TAL1

Cell type

Cell type Class
Blood
Cell type
Erythroid Cells
MeSH Description
The series of cells in the red blood cell lineage at various stages of differentiation.

Attributes by original data submitter

Sample

source_name
Erythroid cells
cell type
Erythroid cells
culture
Two-phase culture system as from Pope SH et al Two-phase liquid culture system models normal human adult erythropoiesis at the molecular level. Eur J Haematol. 2000;64:292-303
time
10 days
chip antibody
Scl/TAL1 (gifted by C. Porcher). Porcher et al Specification of hematopoietic and vascular development by the bHLH transcription factor SCL without direct DNA binding. Development. 1999;126:4603-4615.
individual
C1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
39143101
Reads aligned (%)
68.0
Duplicates removed (%)
7.9
Number of peaks
6694 (qval < 1E-05)

hg38

Number of total reads
39143101
Reads aligned (%)
69.8
Duplicates removed (%)
6.6
Number of peaks
6829 (qval < 1E-05)

Base call quality data from DBCLS SRA