SRX204907
GSM1038277: MM1.S RNA POL2 500nM JQ1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Blood
Cell type
MM.1S
Primary Tissue
Blood
Tissue Diagnosis
Multiple Myeloma

Attributes by original data submitter

Sample

source_name
Multiple myeloma
chip antibody
RNA Pol II (Rpb1 N-terminus)
chip antibody details
Santa Cruz SC-899
cell type
MM1.S
duration
6h
treatment
JQ1
concentration
500nM

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
54697946
Reads aligned (%)
95.8
Duplicates removed (%)
63.2
Number of peaks
18770 (qval < 1E-05)

hg19

Number of total reads
54697946
Reads aligned (%)
95.2
Duplicates removed (%)
63.9
Number of peaks
18746 (qval < 1E-05)

Base call quality data from DBCLS SRA