Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD4

Cell type

Cell type Class
Lung
Cell type
NCI-H2171
Primary Tissue
Lung
Site of Extraction
Effusion, Pleural
Tissue Diagnosis
Carcinoma Small Cell

Attributes by original data submitter

Sample

source_name
Small Cell Lung Carcinoma
chip antibody
Brd4
chip antibody details
Bethyl A301-985A
cell type
H2171
duration
6h
treatment
DMSO
concentration
0.05%

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
46274812
Reads aligned (%)
75.0
Duplicates removed (%)
19.9
Number of peaks
50418 (qval < 1E-05)

hg38

Number of total reads
46274812
Reads aligned (%)
76.1
Duplicates removed (%)
19.2
Number of peaks
50466 (qval < 1E-05)

Base call quality data from DBCLS SRA