SRX204898
GSM1038268: Flag-Evi1Δ324 ChIP DNA; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Gonad
Cell type
SK-OV-3
Primary Tissue
Ovary
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
SKOV-3 cells
cell type
ovarian carcinoma cell line
cell line
SKOV-3 cells
chip sample
Flag-Evi1Δ324 ChIP
chip antibody
Flag M2, Sigma

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
12913314
Reads aligned (%)
98.1
Duplicates removed (%)
2.7
Number of peaks
469 (qval < 1E-05)

hg19

Number of total reads
12913314
Reads aligned (%)
97.2
Duplicates removed (%)
3.9
Number of peaks
726 (qval < 1E-05)

Base call quality data from DBCLS SRA