SRX204659
GSM1037502: Input DNA WT Flag MEFs rep1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
Reconstitute Flag tag MEF cell
cell type
mouse embryonic fibroblasts cell (reconsitute with H2A.X-Flag)
passages
10-20
strain
129/c57 mixed background
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
23602890
Reads aligned (%)
97.9
Duplicates removed (%)
8.6
Number of peaks
192 (qval < 1E-05)

mm9

Number of total reads
23602890
Reads aligned (%)
97.8
Duplicates removed (%)
8.6
Number of peaks
214 (qval < 1E-05)

Base call quality data from DBCLS SRA