Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
ES cell
cell type
mouse ES cell
passages
15-25
strain
129Sv/C57 mixed background
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
15094216
Reads aligned (%)
97.5
Duplicates removed (%)
7.9
Number of peaks
295 (qval < 1E-05)

mm9

Number of total reads
15094216
Reads aligned (%)
97.4
Duplicates removed (%)
8.0
Number of peaks
307 (qval < 1E-05)

Base call quality data from DBCLS SRA