Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
iPS cell from B cell
cell type
mouse secondary system derived iPS cell
passages
15-25
strain
129Sv/C57 mixed background
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
33182038
Reads aligned (%)
88.6
Duplicates removed (%)
8.4
Number of peaks
363 (qval < 1E-05)

mm9

Number of total reads
33182038
Reads aligned (%)
88.4
Duplicates removed (%)
8.4
Number of peaks
420 (qval < 1E-05)

Base call quality data from DBCLS SRA