SRX204595
GSM1037392: RPA ChIPSeq Rif1 panel4B; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rpa2

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
Primary B cells
cell type
Splenocyte (B lymphocytes)
genotype
Rif1F/FCd19Cre/+
chip antibody
anti-RPA32 Calbiochem NA19L, lot#D00127062

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
52815007
Reads aligned (%)
81.9
Duplicates removed (%)
14.0
Number of peaks
817 (qval < 1E-05)

mm9

Number of total reads
52815007
Reads aligned (%)
81.8
Duplicates removed (%)
14.0
Number of peaks
784 (qval < 1E-05)

Base call quality data from DBCLS SRA