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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Smc1a
wikigenes
PDBj
CellType: Embryonic limb
ATCC
MeSH
RIKEN BRC
SRX204337
GSM1036127: ChIPSeq Smc1a e11.5limb rep1; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Smc1a
Cell type
Cell type Class
Embryo
Cell type
Embryonic limb
NA
NA
Attributes by original data submitter
Sample
source_name
Limb bud
embryonic day
E11.5
strain
C57BL/6
chip antibody
Smc1a (Bethyl, Cat. No. A300-055A, Lot No. A300-055A-3)
tissue
Limb bud
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
45567467
Reads aligned (%)
99.1
Duplicates removed (%)
70.8
Number of peaks
8690 (qval < 1E-05)
mm9
Number of total reads
45567467
Reads aligned (%)
99.0
Duplicates removed (%)
70.9
Number of peaks
8657 (qval < 1E-05)
Base call quality data from
DBCLS SRA