Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Smc1a

Cell type

Cell type Class
Embryo
Cell type
Embryonic limb
NA
NA

Attributes by original data submitter

Sample

source_name
Limb bud
embryonic day
E11.5
strain
C57BL/6
chip antibody
Smc1a (Bethyl, Cat. No. A300-055A, Lot No. A300-055A-3)
tissue
Limb bud

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
45567467
Reads aligned (%)
99.1
Duplicates removed (%)
70.8
Number of peaks
8690 (qval < 1E-05)

mm9

Number of total reads
45567467
Reads aligned (%)
99.0
Duplicates removed (%)
70.9
Number of peaks
8657 (qval < 1E-05)

Base call quality data from DBCLS SRA