SRX204334
GSM1036124: ChIPSeq CTCF e10.5hindlimb rep1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ctcf

Cell type

Cell type Class
Embryo
Cell type
Embryonic limb
NA
NA

Attributes by original data submitter

Sample

source_name
Limb bud
embryonic day
E10.5
strain
C57BL/6
chip antibody
CTCF (Millipore, Cat. No. 07-729, Lot No. DAM1745366)
tissue
Limb bud

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
28491396
Reads aligned (%)
92.4
Duplicates removed (%)
14.7
Number of peaks
6614 (qval < 1E-05)

mm9

Number of total reads
28491396
Reads aligned (%)
92.2
Duplicates removed (%)
14.8
Number of peaks
6527 (qval < 1E-05)

Base call quality data from DBCLS SRA