SRX204330
GSM1036120: ChIPSeq H3K4me2 e11.5limb; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Embryo
Cell type
Embryonic limb
NA
NA

Attributes by original data submitter

Sample

source_name
Limb bud
embryonic day
E11.5
strain
C57BL/6
chip antibody
H3K4me2(Millipore, Cat. No. 07-030, Lot No. DAM1724042)
tissue
Limb bud

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
50880582
Reads aligned (%)
99.1
Duplicates removed (%)
19.4
Number of peaks
33496 (qval < 1E-05)

mm9

Number of total reads
50880582
Reads aligned (%)
98.9
Duplicates removed (%)
19.4
Number of peaks
33497 (qval < 1E-05)

Base call quality data from DBCLS SRA