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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: SUMO2
wikigenes
PDBj
CellType: WI-38
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX204173
GSM1035435: ras SUMO2 ChIPSeq; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
SUMO2
Cell type
Cell type Class
Lung
Cell type
WI-38
Primary Tissue
Lung
Tissue Diagnosis
Normal
Attributes by original data submitter
Sample
source_name
ras_SUMO2_ChIPSeq
cell line
WI38
cell type
primary fibroblasts
status
Ras induced senescent
genotype/variation
infected with pBABE-puro-H-RasG12V
chip antibodies
SUMO2 (non-commercial)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
33714090
Reads aligned (%)
89.1
Duplicates removed (%)
29.2
Number of peaks
2789 (qval < 1E-05)
hg19
Number of total reads
33714090
Reads aligned (%)
88.1
Duplicates removed (%)
31.7
Number of peaks
3060 (qval < 1E-05)
Base call quality data from
DBCLS SRA