Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SUMO1

Cell type

Cell type Class
Lung
Cell type
WI-38
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
ras_SUMO1_ChIPSeq
cell line
WI38
cell type
primary fibroblasts
status
Ras induced senescent
genotype/variation
infected with pBABE-puro-H-RasG12V
chip antibodies
SUMO1 (non-commercial)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
30194132
Reads aligned (%)
60.2
Duplicates removed (%)
34.2
Number of peaks
1657 (qval < 1E-05)

hg38

Number of total reads
30194132
Reads aligned (%)
62.7
Duplicates removed (%)
32.2
Number of peaks
1523 (qval < 1E-05)

Base call quality data from DBCLS SRA