SRX204161
GSM1035423: prolif input DNA; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Lung
Cell type
WI-38
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
prolif_input_DNA
cell line
WI38
cell type
primary fibroblasts
status
Proliferative
genotype/variation
infected with pBABE-puro-empty
chip antibodies
none (input)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
20487028
Reads aligned (%)
89.6
Duplicates removed (%)
8.6
Number of peaks
2268 (qval < 1E-05)

hg19

Number of total reads
20487028
Reads aligned (%)
89.0
Duplicates removed (%)
9.3
Number of peaks
2245 (qval < 1E-05)

Base call quality data from DBCLS SRA