SRX204148
GSM1035394: mouse ts input (paired-end); Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Placenta
Cell type
Trophoblast stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
Trophoblast stem cells
strain
129/Sv
chip antibody
None
cell type
Trophoblast stem cells

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
24408580
Reads aligned (%)
87.3
Duplicates removed (%)
35.2
Number of peaks
189 (qval < 1E-05)

mm9

Number of total reads
24408580
Reads aligned (%)
87.2
Duplicates removed (%)
35.4
Number of peaks
164 (qval < 1E-05)

Base call quality data from DBCLS SRA